Philosopher

A data processing toolkit for shotgun proteomics.

Golang Version https://philosopher-toolkit.slack.com

Features

Philosopher provides easy access to third-party tools and custom algorithms allowing users to develop proteomics analysis, from Peptide Spectrum Matching to annotated protein reports. Philosopher is also tunned for Open Search analysis, providing a modified version of the prophets for peptide validation and protein inference. To this date, Philosopher is the only proteomics toolkit that allows you to process and analyze close and open search results.

How to Download

Download the latest version here

How to Use

A simple tutorial is also provided with an extensive example on how to use Philosopher.

Documentation

Check the documentation for more details about the available commands.

Questions, requests and bug reports

If you have any questions, remarks, requests or if you found a bug, please use the Issue tracker.

How to cite

Still in progress!

About the developers

Another great work from Alexey Nesvizhskii’s nesvilab

License

GPL 3