About

Hi! I’m Felipe, a Research Investigator at the University of Michigan Department of Pathology. I’m a bioinformatician scientist with a background in molecular biology and proteomics. I have more than ten years of experience in wet-lab, molecular parasitology, genomics, and proteomics. My research centers on how to properly analyze and interpret biological data, more specifically, proteomics. My focus lies mainly on developing better exploratory data analysis and protein functional analysis techniques to characterize natural phenomena better.

My Research

My research concentrates on the area of bioinformatics, proteomics, and data integration. I am particularly interested in mass spectrometry-based proteomics, software development for proteomics, cancer proteogenomics, and transcriptomics. The computational methods and tools previously developed by my colleagues and I, such as PepExplorer, MSFragger, Philosopher, and PatternLab for Proteomics, are among the most referred proteome informatics tools and are used by hundreds of laboratories worldwide.

I am also a Proteogenomics Data Analysis Center (UM-PGDAC) member as part of the NCI’s Clinical Proteomic Tumor Analysis Consortium (CPTAC) initiative for processing and analyzing hundreds of cancer proteomics samples. UM-PGDAC develops advanced computational infrastructure for comprehensive and global characterization of genomics, transcriptomics, and proteomics data collected from several human tumor cohorts using NCI-provided biospecimens. Since 2019 I have been working as a bioinformatics data analyst with the University of Michigan Proteomics Resource Facility, which provides state of the art capabilities in proteomics to the University of Michigan investigators, including Rogel Cancer Center investigators as Proteomics Shared Resource.